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HUPO-PSI / psi-mi-CV

Molecular Interactions Controll Vocabulary
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experimental condition #18

Closed noedelta closed 8 years ago

noedelta commented 19 years ago

We currently have in the CVs a small list of experimental condition with the following terms (created in Nice PSI meeting 2004): -in vitro -in silico -in vivo ---in situ

This CV has no correponding element is the PSI XML structure, basically because this information can reported in the EXPERIMENT , under HOST ORGANISM using as Taxid == 0 for in vitro and the appropriate Taxid when the interaction occur in a given organism.

Should be decided whether this CV is deleted (as nobody seam to have notice the missing element within PSI XML) or instead a corresponding element is created.

Reported by: luisa_montecchi

noedelta commented 19 years ago

Logged In: YES user_id=653048

deletion approved, since redundant. Databases agree to use convention TaxID=-1 to describe in vitro and predicted interactions. The method will then allow to ditinguish the in vitro interaction from the prediction.

Original comment by: luisa_montecchi

noedelta commented 19 years ago

Original comment by: luisa_montecchi