HUPO-PSI / psi-mod-CV

Reactivated PSI-MOD ontology for molecular mass modifications
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Fixes Acetylation, Nitration, flavins #48

Closed pmt706 closed 3 years ago

pmt706 commented 3 years ago

Attempts to address part of #47.

Adds "residue" to glyco terms (glucosylated --> glucosylated residue)

Nitration (+NO2) and Nitrosylation (+NO) were mishandled before, and this was addressed.

Fixed the Flavin-related terms in the chemical process tree, adding in masses at parent terms for FMN, FAD and Ribosyl-phosphoryl where appropriate

Fixed the acetylation tree, replacing generic acetylations with monoacetylations to match the Diff Mass/Formulae present. created diacetylation and homed that under a new mass-free term for acetylated residue with no number of instances.

Fixed a couple of typos too.