The input format for convert may be problematic or uneasy to use.
The convert mode accepts multiple abundance tables as inputs, which is convenient. But the way to input the multiple files is uneasy to use as it requires a new text file containing paths to these abundance files. Could it be more easier for users?
Suggested solution
A better way is using nargs='+' for add arguments.
For example:
parser.add_argument('intergers',metavar='N',type=int,nargs='+',help='an interger for the accumulator')
The input format for
convertmay be problematic or uneasy to use. Theconvertmode accepts multiple abundance tables as inputs, which is convenient. But the way to input the multiple files is uneasy to use as it requires a new text file containing paths to these abundance files. Could it be more easier for users?Suggested solution A better way is using
nargs='+'for add arguments. For example: