search

HadrienG / InSilicoSeq

:rocket: A sequencing simulator
https://insilicoseq.readthedocs.io
MIT License
184 stars 32 forks source link

InSilicoSeq: error: unrecognized arguments: -–n_reads 0.5M #118

Closed novitch closed 5 years ago

novitch commented 5 years ago

Hi, I would like to try yorsoft but i am unable to use the n_reads option.

The soft works well if I do not choose the n_reads but i'd like to increase the simulation depth

Thanks, Alban,

novitch commented 5 years ago

Here is my command line:


iss generate -–n_reads 5000 -–seed 8283416 --cpus 1 --draft ../genomes_db/GCF_001405535.1_13414_6_71_genomic.fna ../genomes_db/GCF_002222615.2_ASM222261v2_genomic.fna  --model hiseq --output simulation

which produces: usage: iss [subcommand] [options] InSilicoSeq: error: unrecognized arguments: –n_reads 5000 -–seed 8283416

With iss version 1.4.3

novitch commented 5 years ago

also it does not recognize --seed

novitch commented 5 years ago

sorry bad use of -- symbols

One hundred times sorry

HadrienG commented 5 years ago

No worries, glad you got it to work.