HadrienG / InSilicoSeq

:rocket: A sequencing simulator
https://insilicoseq.readthedocs.io
MIT License
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Bump joblib from 0.13.2 to 0.14.0 #120

Closed dependabot-preview[bot] closed 4 years ago

dependabot-preview[bot] commented 4 years ago

Bumps joblib from 0.13.2 to 0.14.0.

Changelog *Sourced from [joblib's changelog](https://github.com/joblib/joblib/blob/master/CHANGES.rst).* > Release 0.14.0 > ============== > > - Improved the load balancing between workers to avoid stranglers caused by an excessively large batch size when the task duration is varying significantly (because of the combined use of `joblib.Parallel` and `joblib.Memory` with a partially warmed cache for instance). > - Add official support for Python 3.8: fixed protocol number in Hasher and updated tests. > - Fix a deadlock when using the dask backend (when scattering large numpy arrays). > - Warn users that they should never use joblib.load with files from untrusted sources. Fix security related API change introduced in numpy 1.6.3 that would prevent using joblib with recent numpy versions. > - Upgrade to cloudpickle 1.1.1 that add supports for the upcoming Python 3.8 release among other things. > - Fix semaphore availability checker to avoid spawning resource trackers on module import. > - Fix the oversubscription protection to only protect against nested Parallel calls. This allows joblib to be run in background threads. > - Fix ValueError (negative dimensions) when pickling large numpy arrays on Windows. > - Upgrade to loky 2.6.0 that add supports for the setting environment variables in child before loading any module. > - Fix the oversubscription protection for native libraries using threadpools (OpenBLAS, MKL, Blis and OpenMP runtimes). The maximal number of threads is can now be set in children using the `inner_max_num_threads` in `parallel_backend`. It defaults to `cpu_count() // n_jobs`.
Commits - [`a07df3b`](https://github.com/joblib/joblib/commit/a07df3beb6565909e660b677922ecd1e6c000d43) Release 0.14.0 - [`1940e57`](https://github.com/joblib/joblib/commit/1940e57af5900375704adc690fa5500de0edd06a) DOC fix typo in documentation - [`a41bd5a`](https://github.com/joblib/joblib/commit/a41bd5a71a1889a46fb635831fdf2767e2dc89fe) ENH over-subscription mitigation + MTN vendor loky 2.6 ([#940](https://github-redirect.dependabot.com/joblib/joblib/issues/940)) - [`dec1595`](https://github.com/joblib/joblib/commit/dec1595b6610d312b0e23ed78e8f4d5233674bbb) ENH Improve load-balancing between workers for large batch sizes. ([#899](https://github-redirect.dependabot.com/joblib/joblib/issues/899)) - [`470a637`](https://github.com/joblib/joblib/commit/470a6372dbae826b2f6107a77f6457e956249fef) Missing entry in changelog - [`f7f3c33`](https://github.com/joblib/joblib/commit/f7f3c33ce0e938943a60841f94818076fe9c8bb0) prevent overflow when pickling large numpy arrays ([#920](https://github-redirect.dependabot.com/joblib/joblib/issues/920)) - [`79847c5`](https://github.com/joblib/joblib/commit/79847c5fa6701da47f8a20e880fa744950fee109) Change setup.py to import setup from setuptools which supports ([#924](https://github-redirect.dependabot.com/joblib/joblib/issues/924)) - [`5397271`](https://github.com/joblib/joblib/commit/5397271c8f5de205304e691b5efc4066d4bcceb7) Upgrade to cloudpickle 1.2.2 ([#938](https://github-redirect.dependabot.com/joblib/joblib/issues/938)) - [`591a8e6`](https://github.com/joblib/joblib/commit/591a8e683f5a4a4e7ce4bb382024234315abc505) Fix dask scatter deadlock ([#914](https://github-redirect.dependabot.com/joblib/joblib/issues/914)) - [`eb7a949`](https://github.com/joblib/joblib/commit/eb7a9496efe43bec04a5b430f1f6b169691e79a6) ENH only protect against nested call in Parallel ([#934](https://github-redirect.dependabot.com/joblib/joblib/issues/934)) - Additional commits viewable in [compare view](https://github.com/joblib/joblib/compare/0.13.2...0.14.0)


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codecov[bot] commented 4 years ago

Codecov Report

Merging #120 into dev will not change coverage. The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##              dev     #120   +/-   ##
=======================================
  Coverage   91.17%   91.17%           
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  Files          10       10           
  Lines         793      793           
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  Hits          723      723           
  Misses         70       70

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