HadrienG / InSilicoSeq

:rocket: A sequencing simulator
https://insilicoseq.readthedocs.io
MIT License
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Bump scipy from 1.3.1 to 1.4.0 #137

Closed dependabot-preview[bot] closed 4 years ago

dependabot-preview[bot] commented 4 years ago

Bumps scipy from 1.3.1 to 1.4.0.

Release notes *Sourced from [scipy's releases](https://github.com/scipy/scipy/releases).* > SciPy 1.4.0 Release Notes > =================== > > SciPy `1.4.0` is the culmination of 6 months of hard work. It contains > many new features, numerous bug-fixes, improved test coverage and better > documentation. There have been a number of deprecations and API changes > in this release, which are documented below. All users are encouraged to > upgrade to this release, as there are a large number of bug-fixes and > optimizations. Before upgrading, we recommend that users check that > their own code does not use deprecated SciPy functionality (to do so, > run your code with ``python -Wd`` and check for ``DeprecationWarning`` s). > Our development attention will now shift to bug-fix releases on the > 1.4.x branch, and on adding new features on the master branch. > > This release requires Python `3.5+` and NumPy `>=1.13.3` (for Python `3.5`, `3.6`), > `>=1.14.5` (for Python `3.7`), `>= 1.17.3` (for Python `3.8`) > > For running on PyPy, PyPy3 `6.0+` and NumPy `1.15.0` are required. > > Highlights of this release > ------------------------- > > - a new submodule, `scipy.fft`, now supersedes `scipy.fftpack`; this > means support for ``long double`` transforms, faster multi-dimensional > transforms, improved algorithm time complexity, release of the global > intepreter lock, and control over threading behavior > - support for ``pydata/sparse`` arrays in `scipy.sparse.linalg` > - substantial improvement to the documentation and functionality of > several `scipy.special` functions, and some new additions > - the generalized inverse Gaussian distribution has been added to > `scipy.stats` > - an implementation of the Edmonds-Karp algorithm in > `scipy.sparse.csgraph.maximum_flow` > - `scipy.spatial.SphericalVoronoi` now supports n-dimensional input, > has linear memory complexity, improved performance, and > supports single-hemisphere generators > > > New features > ========== > > Infrastructure > ---------------- > Documentation can now be built with ``runtests.py --doc`` > > A ``Dockerfile`` is now available in the ``scipy/scipy-dev`` repository to > facilitate getting started with SciPy development. > > `scipy.constants` improvements > ---------------------------------- > ... (truncated)
Commits - [`f533e91`](https://github.com/scipy/scipy/commit/f533e9103e249ac56654626621aca3ec1bffff0e) REL: set version to 1.4.0 - [`2d85bb2`](https://github.com/scipy/scipy/commit/2d85bb2876daec08a3ad0a097268e6b3d464b8fd) Merge pull request [#11221](https://github-redirect.dependabot.com/scipy/scipy/issues/11221) from tylerjereddy/scipy-140-rel-prep - [`c705210`](https://github.com/scipy/scipy/commit/c705210bbe79ab9ad242cdfaa184f12621c7790a) DOC: update 1.4.0 release notes - [`be5fe99`](https://github.com/scipy/scipy/commit/be5fe99a8bf3bc79162d82b1b06e4228025e983f) BUG: sparse.linalg: mistake in unsymm. real shift-invert ARPACK eigenvalue se... - [`119bf01`](https://github.com/scipy/scipy/commit/119bf01c2d2581a8b4007b6babd4437df888887e) TST: Bump up tolerance for test_maxiter_worsening - [`2613755`](https://github.com/scipy/scipy/commit/261375509706420155f7e69df9621392cec5c2d6) TST: Remove XFAIL markers for ppc64le - [`295cb2d`](https://github.com/scipy/scipy/commit/295cb2db58913c069d853cf3c667a3b85ac45413) TST: Fix tolerance of some tests - [`30be812`](https://github.com/scipy/scipy/commit/30be812e14fc807bae79b8aa3ccbe6322eeb0921) REL: bump version to 1.4.0 "final" - [`1a4463e`](https://github.com/scipy/scipy/commit/1a4463e21b9b9fb6f7ba2e9505d3cd192681cc76) REL: set version to 1.4.0rc2 - [`6a00a39`](https://github.com/scipy/scipy/commit/6a00a393e6d15ee30a46e8b856e0a7010ee6a68e) Merge pull request [#11161](https://github-redirect.dependabot.com/scipy/scipy/issues/11161) from tylerjereddy/backports_140_rc2 - Additional commits viewable in [compare view](https://github.com/scipy/scipy/compare/v1.3.1...v1.4.0)


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codecov[bot] commented 4 years ago

Codecov Report

Merging #137 into dev will not change coverage. The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##              dev     #137   +/-   ##
=======================================
  Coverage   89.42%   89.42%           
=======================================
  Files          10       10           
  Lines         813      813           
=======================================
  Hits          727      727           
  Misses         86       86

Continue to review full report at Codecov.

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dependabot-preview[bot] commented 4 years ago

Superseded by #138.