HadrienG / InSilicoSeq

:rocket: A sequencing simulator
https://insilicoseq.readthedocs.io
MIT License
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Bump scipy from 1.3.1 to 1.4.1 #138

Closed dependabot-preview[bot] closed 4 years ago

dependabot-preview[bot] commented 4 years ago

Bumps scipy from 1.3.1 to 1.4.1.

Release notes

Sourced from scipy's releases.

SciPy 1.4.1 Release Notes

SciPy 1.4.1 is a bug-fix release with no new features compared to 1.4.0. Importantly, it aims to fix a problem where an older version of pybind11 may cause a segmentation fault when imported alongside incompatible libraries.

Authors

  • Ralf Gommers
  • Tyler Reddy

SciPy 1.4.0 Release Notes

SciPy 1.4.0 is the culmination of 6 months of hard work. It contains many new features, numerous bug-fixes, improved test coverage and better documentation. There have been a number of deprecations and API changes in this release, which are documented below. All users are encouraged to upgrade to this release, as there are a large number of bug-fixes and optimizations. Before upgrading, we recommend that users check that their own code does not use deprecated SciPy functionality (to do so, run your code with python -Wd and check for DeprecationWarning s). Our development attention will now shift to bug-fix releases on the 1.4.x branch, and on adding new features on the master branch.

This release requires Python 3.5+ and NumPy >=1.13.3 (for Python 3.5, 3.6), >=1.14.5 (for Python 3.7), >= 1.17.3 (for Python 3.8)

For running on PyPy, PyPy3 6.0+ and NumPy 1.15.0 are required.

Highlights of this release

  • a new submodule, scipy.fft, now supersedes scipy.fftpack; this means support for long double transforms, faster multi-dimensional transforms, improved algorithm time complexity, release of the global intepreter lock, and control over threading behavior
  • support for pydata/sparse arrays in scipy.sparse.linalg
  • substantial improvement to the documentation and functionality of several scipy.special functions, and some new additions
  • the generalized inverse Gaussian distribution has been added to scipy.stats
  • an implementation of the Edmonds-Karp algorithm in scipy.sparse.csgraph.maximum_flow
  • scipy.spatial.SphericalVoronoi now supports n-dimensional input, has linear memory complexity, improved performance, and supports single-hemisphere generators
... (truncated)
Commits
  • adc4f4f REL: SciPy 1.4.1 release commit
  • 470c16d Merge pull request #11240 from tylerjereddy/treddy_prep_141
  • 87b5c30 DOC: 1.4.1 release notes revision
  • 29bf2cd BLD: update minimum pybind11 version to 2.4.0.
  • d45fb7e MAINT, REL: prepare for SciPy 1.4.1
  • f533e91 REL: set version to 1.4.0
  • 2d85bb2 Merge pull request #11221 from tylerjereddy/scipy-140-rel-prep
  • c705210 DOC: update 1.4.0 release notes
  • be5fe99 BUG: sparse.linalg: mistake in unsymm. real shift-invert ARPACK eigenvalue se...
  • 119bf01 TST: Bump up tolerance for test_maxiter_worsening
  • Additional commits viewable in compare view


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codecov[bot] commented 4 years ago

Codecov Report

Merging #138 into dev will not change coverage. The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##              dev     #138   +/-   ##
=======================================
  Coverage   89.42%   89.42%           
=======================================
  Files          10       10           
  Lines         813      813           
=======================================
  Hits          727      727           
  Misses         86       86

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