HadrienG / InSilicoSeq

:rocket: A sequencing simulator
https://insilicoseq.readthedocs.io
MIT License
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Bump numpy from 1.17.4 to 1.18.1 #144

Closed dependabot-preview[bot] closed 4 years ago

dependabot-preview[bot] commented 4 years ago

Bumps numpy from 1.17.4 to 1.18.1.

Release notes

Sourced from numpy's releases.

v1.18.1

NumPy 1.18.1 Release Notes

This release contains fixes for bugs reported against NumPy 1.18.0. Two bugs in particular that caused widespread problems downstream were:

  • The cython random extension test was not using a temporary directory for building, resulting in a permission violation. Fixed.
  • Numpy distutils was appending [-std=c99]{.title-ref} to all C compiler runs, leading to changed behavior and compile problems downstream. That flag is now only applied when building numpy C code.

The Python versions supported in this release are 3.5-3.8. Downstream developers should use Cython >= 0.29.14 for Python 3.8 support and OpenBLAS >= 3.7 to avoid errors on the Skylake architecture.

Contributors

A total of 7 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Charles Harris
  • Matti Picus
  • Maxwell Aladago
  • Pauli Virtanen
  • Ralf Gommers
  • Tyler Reddy
  • Warren Weckesser

Pull requests merged

A total of 13 pull requests were merged for this release.

  • #15158: MAINT: Update pavement.py for towncrier.
  • #15159: DOC: add moved modules to 1.18 release note
  • #15161: MAINT, DOC: Minor backports and updates for 1.18.x
  • #15176: TST: Add assert_array_equal test for big integer arrays
  • #15184: BUG: use tmp dir and check version for cython test (#15170)
  • #15220: BUG: distutils: fix msvc+gfortran openblas handling corner case
  • #15221: BUG: remove -std=c99 for c++ compilation (#15194)
  • #15222: MAINT: unskip test on win32
  • #15223: TST: add BLAS ILP64 run in Travis & Azure
  • #15245: MAINT: only add --std=c99 where needed
  • #15246: BUG: lib: Fix handling of integer arrays by gradient.
  • #15247: MAINT: Do not use private Python function in testing
  • #15250: REL: Prepare for the NumPy 1.18.1 release.
... (truncated)
Commits
  • 91118b3 REL: NumPy 1.18.1 release.
  • 1117ebf Merge pull request #15250 from charris/prepare-1.18.1-release
  • b954feb REL: Prepare for the NumPy 1.18.1 release.
  • 4234c0a Merge pull request #15247 from charris/backport-15203
  • 6182b48 Merge pull request #15246 from charris/backport-15212
  • 40addab Merge pull request #15245 from charris/backport-15238
  • fa6f53a MAINT: refactor function out of test module
  • c1ac694 BUG: lib: Fix handling of integer arrays by gradient.
  • c1f1875 MAINT: --std=c99 works, but -std=c99 is better
  • 405b802 MAINT: add --std=c99 in setup.py, not distutils
  • Additional commits viewable in compare view


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codecov[bot] commented 4 years ago

Codecov Report

Merging #144 into dev will not change coverage. The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##              dev     #144   +/-   ##
=======================================
  Coverage   89.42%   89.42%           
=======================================
  Files          10       10           
  Lines         813      813           
=======================================
  Hits          727      727           
  Misses         86       86

Continue to review full report at Codecov.

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dependabot-preview[bot] commented 4 years ago

Superseded by #153.