Closed domenico-simone closed 3 years ago
Hi, while investigating test suite errors in InSilicoSeq caused by update to Biopython 1.78, I came up with a patch, available here for the moment: https://salsa.debian.org/med-team/insilicoseq/-/raw/debian/1.5.0-1/debian/patches/remove-bio-alphabet.patch
I'm seeing to put together a pull request, if that helps.
Same issue :(
Sorry for the delay folks, I'll release a minor version with a fix this week.
Hi Hadrien,
I've just installed InSilicoSeq through pip (v20.2.2) in a conda environment. This is the installation output:
I've tried to run the tool with no arguments, but I get this error:
looks like pip installs Biopython 1.78 which doesn't support Bio.Alphabet anymore (https://biopython.org/wiki/Alphabet). I managed to downgrade Biopython and have the tool running but installation files should specify a Biopython <1.78.
Great tool anyway :)
Domenico