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HadrienG / InSilicoSeq

:rocket: A sequencing simulator
https://insilicoseq.readthedocs.io
MIT License
176 stars 32 forks source link

Biopython 1.79 issue #207

Closed dturaev closed 2 years ago

dturaev commented 3 years ago

The iss generate command doesn't work with Biopython 1.79. It shows warnings like "Biopython Deprecation Warning: myseq.tomutable() is deprecated; please use MutableSeq(myseq) instead.", and leads to an exception in the joblib call. Downgrading to Biopython 1.78 fixes the issue.

HadrienG commented 2 years ago

I updated the bioconda recipe to require biopython <= 1.78. A minor version to fix the pip installs will follow soon