HadrienG
commented
10 months ago Hi!
you can do this with the --draft and --abundance_file (or --coverage_file) options.
The entries in the abundance/coverage files should be the name of the fasta files passed to --draft
Hello I ran iss with a set of genomes some of which have some contigs (<6) and/or plasmids associated with them. I setup my abundance file to id each contig separately and assigned them the same abundance. Will this give me an accurate profile of the genomic contribution of these contigs? I realize that will make the total abundance >1, but I didn't get an error when I attempted it. Thanks