The two error models currently built-in are based on fairly old genomics data. It'd be nice to base them on recent-ish metagenomes, or at least recent genomic datasets sequencing with most popular read-lengths + lib prep
[x] Identify 1 MiSeq, 1 HiSeq and 1 NovaSeq dataset to use
MiSeq
[x] Assembly with megahit
[x] mapping the reads back to the assembly with bowtie2
[x] build models from the bam file
HiSeq
[x] Assembly with megahit used public illumina data from human
[x] mapping the reads back to the assembly with bowtie2
[x] build models from the bam file
NovaSeq
[x] Assembly with megahit used public illumina data from human
[x] mapping the reads back to the assembly with bowtie2
[x] build models from the bam file
Roadmap reference: Provide at least 1 good HiSeq and 1 good MiSeq model
The two error models currently built-in are based on fairly old genomics data. It'd be nice to base them on recent-ish metagenomes, or at least recent genomic datasets sequencing with most popular read-lengths + lib prep
MiSeq
HiSeq
Assembly with megahitused public illumina data from humanNovaSeq
Assembly with megahitused public illumina data from humanRoadmap reference: Provide at least 1 good HiSeq and 1 good MiSeq model