-profile planet specific issue

Error:
Work dir:
  /export/proj/e_hirae/results/24_genomes_pangenome/work/0f/7f1586fb1a8c3b50db4b7348f45b97

Tip: when you have fixed the problem you can continue the execution appending to the nextflow command line the option `-resume`

 -- Check '.nextflow.log' file for details
N E X T F L O W  ~  version 0.26.2
Launching `hadrieng/nanoflow` [berserk_panini] - revision: 8bc209d00c [master]
[warm up] executor > sge
[09/742479] Submitted process > adapter_trimming
[c3/a3ba10] Submitted process > assembly
ERROR ~ Error executing process > 'assembly'

Caused by:
  Process `assembly` terminated with an error exit status (1)

Command executed:

  unicycler -l "trimmed.fastq" -o unicycler_out
  mv unicycler_out/assembly.fasta assembly.fasta

Command exit status:
  1

Command output:

  Starting Unicycler (2018-03-06 19:35:37)
      Welcome to Unicycler, an assembly pipeline for bacterial genomes. Since you
  provided only long reads, Unicycler will assemble the reads with miniasm and
  then run repeated polishing rounds using Racon.
      For more information, please see https://github.com/rrwick/Unicycler

  Command: /opt/sw/unicycler/0.4.3/bin/unicycler -l trimmed.fastq -o unicycler_out

  Unicycler version: v0.4.3
  Using 8 threads

  Making output directory:
    unicycler_out

  Dependencies:
    Program         Version   Status
    spades.py                 not used
    racon           -         bad
    makeblastdb     2.6.0+    good
    tblastn         2.6.0+    good
    bowtie2-build             not used
    bowtie2                   not used
    samtools                  not used
    java                      not used
    pilon                     not used
    bcftools                  not used

Command error:
  tput: No value for $TERM and no -T specified
  tput: No value for $TERM and no -T specified
  tput: No value for $TERM and no -T specified
  Error: Racon was found but does not produce output
HadrienG / nanoflow

-profile planet specific issue #7
