‘httpuv’, ‘sourcetools’ had non-zero exit status

[assetdaniyarov]

How can I solve this problem? when installing and starting a pepline

biocLite("HajkD/LTRpred") BioC_mirror: https://bioconductor.org Using Bioconductor 3.6 (BiocInstaller 1.28.0), R 3.4.4 (2018-03-15). Installing github package(s) ‘HajkD/LTRpred’ Downloading GitHub repo HajkD/LTRpred@master from URL https://api.github.com/repos/HajkD/LTRpred/zipball/master Installing LTRpred пробую URL 'https://cloud.r-project.org/src/contrib/amap_0.8-14.tar.gz' Content type 'application/x-gzip' length 259358 bytes (253 KB)

downloaded 253 KB

Installing amap '/usr/lib/R/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet \ CMD INSTALL '/tmp/Rtmp2VZBrC/devtools61bed5b1463/amap' \ --library='/home/aset/R/x86_64-pc-linux-gnu-library/3.4' --install-tests

• installing source package ‘amap’ ... пакет ‘amap’ удачно распакован, MD5 sums проверены checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for pthread_create in -lpthread... yes configure: creating ./config.status config.status: creating src/Makevars libs g++ -I/usr/share/R/include -DNDEBUG -I/usr/local/include/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c acprob.cpp -o acprob.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/local/include/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c burt.c -o burt.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/local/include/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c diss.c -o diss.o g++ -I/usr/share/R/include -DNDEBUG -I/usr/local/include/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c distance.cpp -o distance.o g++ -I/usr/share/R/include -DNDEBUG -I/usr/local/include/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hclust.cpp -o hclust.o g++ -I/usr/share/R/include -DNDEBUG -I/usr/local/include/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c kmeans.cpp -o kmeans.o g++ -I/usr/share/R/include -DNDEBUG -I/usr/local/include/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matrice.cpp -o matrice.o gfortran -fpic -g -O2 -fstack-protector-strong -c pop.f -o pop.o /bin/bash: gfortran: команда не найдена /usr/lib/R/etc/Makeconf:182: recipe for target 'pop.o' failed make: *** [pop.o] Error 127 ERROR: compilation failed for package ‘amap’
• removing ‘/home/aset/R/x86_64-pc-linux-gnu-library/3.4/amap’ Installation failed: Command failed (1) '/usr/lib/R/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet \ CMD INSTALL '/tmp/Rtmp2VZBrC/devtools61be2461ee30/HajkD-LTRpred-fe9851d' \ --library='/home/aset/R/x86_64-pc-linux-gnu-library/3.4' --install-tests

ERROR: dependency ‘amap’ is not available for package ‘LTRpred’

• removing ‘/home/aset/R/x86_64-pc-linux-gnu-library/3.4/LTRpred’ Installation failed: Command failed (1) installation path not writeable, unable to update packages: XML, cluster, foreign, MASS, Matrix, nlme, survival

[HajkD]

Hi @aset8,

It seems like you need to install the package amap before being able to install LTRpred. Did you already install all tools and dependencies as specified here in the Introduction https://hajkd.github.io/LTRpred/articles/Introduction.html#installation ?

Many thanks and best wishes, Hajk