HajkD / LTRpred

De novo annotation of young retrotransposons
https://hajkd.github.io/LTRpred/
GNU General Public License v2.0
46 stars 8 forks source link

R installation instructions need to be updated #12

Closed mdozmorov closed 4 years ago

mdozmorov commented 4 years ago

When tested on a clean R/Rstudio installation (rocker/rstudio), the installation instructions require manual intervention

install.packages(c("tidyverse", "data.table", "seqinr", "biomartr", "ape", "dtplyr", "devtools"))

ERROR: dependencies ‘biomaRt’, ‘Biostrings’ are not available for package ‘biomartr’
* removing ‘/usr/local/lib/R/site-library/biomartr’
Warning in install.packages :
  installation of package ‘biomartr’ had non-zero exit status

Installing biomaRt and Biostrings and then installing biomartr worked. Please, adjust accordingly.

HajkD commented 4 years ago

Dear Mikhail,

Thank you very much for making me aware of this issue.

I just changed the orders of the installation instructions and pushed the new version to GitHub.

Many thanks, Hajk