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HajkD / LTRpred

De novo annotation of young retrotransposons
https://hajkd.github.io/LTRpred/
GNU General Public License v2.0
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Issue with genome fasta header format #21

Open acontrerasg opened 3 years ago

acontrerasg commented 3 years ago

dear Hajk,

I noticed that, under certain headers formats, in my case:

Chr1 Chr2 Chr3 Chr4 Chr5 Chr6 Chr7 Scaffold_1 Scaffold_2 Scaffold_3

The tool chops out part of the genomic scaffold name after the underscore in the gff and bed result files, being imposible to correctly locate the position of the predicted LTR transposon.

Changing header names seems to fix the issue.

Chr1 Chr2 Chr3 Chr4 Chr5 Chr6 Chr7 Scaffold1 Scaffold2 Scaffold3

Thanks