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HannahVMeyer / PhenotypeSimulator

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Error when building vignettes #6

Closed reviewernumbertwo closed 6 years ago

reviewernumbertwo commented 6 years ago

When I attempted to build the package it failed (see below), as the the vignettes didn't build correctly - Simulation-and-LinearModel.Rmd seems to be looking for some example data in extdata/resultsSimulationAndLinearModel/simulation.rds. Should this be provided, or is it supposed to be being built on-the-fly?

> R CMD build PhenotypeSimulator-master
* checking for file ‘PhenotypeSimulator-master/DESCRIPTION’ ... OK
* preparing ‘PhenotypeSimulator’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.

Attaching package: 'gplots'

The following object is masked from 'package:stats':

    lowess

Quitting from lines 188-191 (Simulation-and-LinearModel.Rmd) 
Error: processing vignette 'Simulation-and-LinearModel.Rmd' failed with diagnostics:
cannot open the connection
Execution halted
HannahVMeyer commented 6 years ago

Apologies, it should have been provided (but was excluded through the .gitignore). I have just tried installing it again and it should work now.