Closed dhcai21 closed 3 years ago
Hi, could you try to use fewer cores to run (for example, -t 32 or -t 8) on this small example dataset ? sometimes the read error correction tool 'daccord' causes 'segmentation fault' if using too many cores.
Hi Xiao, Thanks for the reply! I have tried the tool using different numbers of cores, i.e. 1, and 8. But I still have the same problem, the "segmentation fault"
Hi, the reason is probably due to the version of daccord. You could have a look at the documentation(I have updated it) of using daccord. You should check your daccord version and make sure use daccord-0.0.10, so, please follow the new instructions and it should work.
Hi Xiao, I reinstall the Daccord with version 0.0.10 according to your advice (I used version 0.0.14 previously). Now I can run the tool normally. Thanks!
Dear Xiao Luo,
I run Strainline on the data in the "example" folder with the following command:
But I encountered a problem shown as follow:
Could you please help me fix this problem?
Thanks!
Dehan