I installed Strainline (and also Daccord) following the instruction in the README. As a test I ran Strainline on the example data from this repository however I encountered the following error:
"Strainline/src/clustering.py", line 172, in <module>
cluster_list = get_clusters(in_fa, outdir, int(topk), platform, int(threads), int(min_ovlp_len),
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Strainline/src/clustering.py", line 92, in get_clusters
header, seq = id2fa[id].strip().split('\n')
^^^^^^^^^^^
ValueError: not enough values to unpack (expected 2, got 1)
I also ran the tool on my PacBio data and encounter the same issue.
linvei
commented
3 days ago
Dear developers,
I installed Strainline (and also Daccord) following the instruction in the README. As a test I ran Strainline on the example data from this repository however I encountered the following error:
I also ran the tool on my PacBio data and encounter the same issue.
Do you have any idea what the problem could be?
Thanks a lot for your help!
This issue is related to the following issue: https://github.com/HaploKit/Strainline/issues/11