Open npdungca opened 6 months ago
Hi. I'm getting this error when trying to run strainline in a HPC:
daligner: -T is an illegal option Usage: LAcheck [-vS] <src1:db|dam> [ <src2:db|dam> ] ...
I'm using this command: ./strainline.sh -i $datadir/BC${i}.fasta -o $outdir/BC${i}_strainline -p ont --minSeedLen 200 --minTrimmedLen 200 -t 30
./strainline.sh -i $datadir/BC${i}.fasta -o $outdir/BC${i}_strainline -p ont --minSeedLen 200 --minTrimmedLen 200 -t 30
Thank you in advance for your help.
Hi. I'm getting this error when trying to run strainline in a HPC:
daligner: -T is an illegal option Usage: LAcheck [-vS] <src1:db|dam> [ <src2:db|dam> ] ...
I'm using this command:
./strainline.sh -i $datadir/BC${i}.fasta -o $outdir/BC${i}_strainline -p ont --minSeedLen 200 --minTrimmedLen 200 -t 30Thank you in advance for your help.