HaploKit / Strainline

Full-length de novo viral haplotype reconstruction from noisy long reads
GNU General Public License v3.0
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error Fasta line is too long #7

Closed antoine4ucsd closed 2 years ago

antoine4ucsd commented 2 years ago

Hello did you ever get such error ?

~/src/strainline.sh -i reads.fasta -o out -p pb -k 20 -t 32
File reads.fasta, Line 156: Fasta line is too long (> 9998 chars)

is it a size limit (input as 150k reads)? what would you recommend in such case? thank you