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HatsuneCode / TrustVDJ

TrustVDJ: Tools for Immune Repertoire Analysis
GNU General Public License v3.0
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Error in loading TRUST4 #1

Open parsboy66 opened 1 year ago

parsboy66 commented 1 year ago

Thanks for the nice job!

I have faced with a problem in loading the library example(trust4) as it is provided:

However there is no problem in loading 10x files,

airrTrust = system.file('extdata', 'TRUST4_airr.tsv.gz', package = 'TrustVDJ') bcTrust = system.file('extdata', 'TRUST4_barcode_report.tsv.gz', package = 'TrustVDJ') vdjTrust = ReadTrust(airr_file = airrTrust, barcode_report_file = bcTrust, verbose = FALSE)

Error in names(object) <- nm : 'names' attribute [10] must be the same length as the vector [0]

appreciate you helping me overcome the error Iman

HatsuneCode commented 1 year ago

Hello, thank you. TRUST4 has updated the AIRR file format, this package has been suspended by developers. I personally recommend that you can directly use the TRUST4 AIRR file for analysis (it may not require any packages).