Update hg38 data download to use curl instead of gsutil.

HazyResearch / hyena-dna

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

https://arxiv.org/abs/2306.15794

Apache License 2.0

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Update hg38 data download to use curl instead of gsutil. #32

Closed jondeaton closed 10 months ago

jondeaton commented 10 months ago

Interesting, I think this error is probably coming because the data/hg38 directory wasn't there? I fixed the mkdir command to use the -p so it correctly makes this directory. Working for me once this directory is there.

exnx commented 10 months ago

oh awesome, ok that worked! I'm wondering, how does this work without having to pay for the download? Someone is hosting it and being charged, right?

Thank you!

jondeaton commented 10 months ago

Good point, actually - I'm not quite sure. I found it these here: https://github.com/calico/basenji/blob/master/manuscripts/akita/tutorial.ipynb which seems to be from a Calico project.