Question: How to generate DNA sequence or sequence embeddings based on own bed file

HazyResearch / hyena-dna

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

https://arxiv.org/abs/2306.15794

Apache License 2.0

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Question: How to generate DNA sequence or sequence embeddings based on own bed file #63

Open HelloWorldLTY opened 6 months ago

HelloWorldLTY commented 6 months ago

Hi, I wonder if there are any approaches I can use to generate the DNA sequence based on each line of the bed file. I know enformer can do that and centered by tss. Thanks a lot.