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HazyResearch / hyena-dna

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
https://arxiv.org/abs/2306.15794
Apache License 2.0
532 stars 74 forks source link

install problem #72

Open agryji08 opened 6 days ago

agryji08 commented 6 days ago

pip install -e . --no-build-isolation Obtaining file:///lustre/work/schnablelab/zji7/hyena-dna/flash-attention Checking if build backend supports build_editable ... done Preparing editable metadata (pyproject.toml) ... error error: subprocess-exited-with-error

× Preparing editable metadata (pyproject.toml) did not run successfully. │ exit code: 1 ╰─> [17 lines of output] Traceback (most recent call last): File "/home/schnablelab/zji7/.conda/envs/hyena-dna/lib/python3.8/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 35 3, in main() File "/home/schnablelab/zji7/.conda/envs/hyena-dna/lib/python3.8/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 33 5, in main json_out['return_val'] = hook(**hook_input['kwargs']) File "/home/schnablelab/zji7/.conda/envs/hyena-dna/lib/python3.8/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 18 1, in prepare_metadata_for_build_editable return hook(metadata_directory, config_settings) File "/home/schnablelab/zji7/.conda/envs/hyena-dna/lib/python3.8/site-packages/setuptools/build_meta.py", line 463, in prepare_metadata_for_bui ld_editable return self.prepare_metadata_for_build_wheel( File "/home/schnablelab/zji7/.conda/envs/hyena-dna/lib/python3.8/site-packages/setuptools/build_meta.py", line 368, in prepare_metadata_for_bui ld_wheel self.run_setup() File "/home/schnablelab/zji7/.conda/envs/hyena-dna/lib/python3.8/site-packages/setuptools/build_meta.py", line 313, in run_setup exec(code, locals()) File "", line 14, in File "/home/schnablelab/zji7/.conda/envs/hyena-dna/lib/python3.8/site-packages/torch/utils/cpp_extension.py", line 25, in from pkg_resources import packaging # type: ignore[attr-defined] ImportError: cannot import name 'packaging' from 'pkg_resources' (/home/schnablelab/zji7/.conda/envs/hyena-dna/lib/python3.8/site-packages/pkg_re sources/init.py) [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. error: metadata-generation-failed × Encountered error while generating package metadata. ╰─> See above for output. note: This is an issue with the package mentioned above, not pip. hint: See above for details.