Health-Informatics-UoN / carrot-mapper

Convenient and Reusable Rapid Omop Transformer.
https://carrot.ac.uk
MIT License
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Add support for concepts having "Meas value" domain #891

Closed AndrewThien closed 4 weeks ago

AndrewThien commented 1 month ago

Changes

This PR added logic to support adding the "Meas Value" domain concepts. They will be mapped to the field "value_as_concept_id" of table MEASUREMENT in OMOP.

The filter for Review Rules was modified to avoid showing overlapping concepts on this page.

This PR was tested with the concepts in #769 and Carrot CDM. However, it may still need testing with the real SR and data

Closes #769 Closes #648 (the concepts having "Meas value" will be mapped to the field "value_as_concept_id" of table MEASUREMENT following OMOP CDM 5.4 instructions - Noted: concepts having "Measurement" domain will not mapped to "value_as_concept_id", but the field "value_as_number" will be mapped as normal)

github-actions[bot] commented 1 month ago
Tests Skipped Failures Errors Time
25 1 :zzz: 3 :x: 0 :fire: 2.985s :stopwatch:
github-actions[bot] commented 1 month ago
Tests Skipped Failures Errors Time
25 1 :zzz: 1 :x: 0 :fire: 3.017s :stopwatch: