HealthBioscienceIDEAS / microscopy-novice

https://healthbioscienceideas.github.io/microscopy-novice/
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Filetypes and metadata episode #33

Closed K-Meech closed 7 months ago

K-Meech commented 8 months ago

Closes https://github.com/HealthBioscienceIDEAS/microscopy-novice/issues/20

This adds a first draft of the filetypes and metadata episode. This aims to introduce different image file formats + metadata, using napari-aicsimageio.

It's probably best to build this branch locally so you can see all the images + text together with the proper formatting.

github-actions[bot] commented 8 months ago

Thank you!

Thank you for your pull request :smiley:

:robot: This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

Rendered Changes

:mag: Inspect the changes: https://github.com/HealthBioscienceIDEAS/microscopy-novice/compare/md-outputs..md-outputs-PR-33

The following changes were observed in the rendered markdown documents:

 config.yaml                     |   1 +
 fig/image-line.png (new)        | Bin 0 -> 19410 bytes
 fig/image-pyramid.png (new)     | Bin 0 -> 644751 bytes
 fig/metadata-console.png (new)  | Bin 0 -> 42118 bytes
 fig/ome-tree-widget.png (new)   | Bin 0 -> 160906 bytes
 fig/plate1-czi-napari.png (new) | Bin 0 -> 692139 bytes
 fig/yeast-exercise-2.png (new)  | Bin 0 -> 482742 bytes
 fig/yeast-exercise-3.png (new)  | Bin 0 -> 293517 bytes
 fig/yeast-exercise-4.png (new)  | Bin 0 -> 691577 bytes
 filetypes-and-metadata.md (new) | 560 ++++++++++++++++++++++++++++++++++++++++
 md5sum.txt                      |   3 +-
 11 files changed, 563 insertions(+), 1 deletion(-)
What does this mean? If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible. This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

:stopwatch: Updated at 2024-01-15 09:59:17 +0000

K-Meech commented 7 months ago

@thompson318 @davecash75 - I made a new version of the filetypes and metadata episode incorporating your comments. Could you take another look and approve or request changes? Thanks!