HealthBioscienceIDEAS / microscopy-novice

https://healthbioscienceideas.github.io/microscopy-novice/
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Designing a light microscopy experiment episode #41

Closed K-Meech closed 6 months ago

K-Meech commented 7 months ago

Closes https://github.com/HealthBioscienceIDEAS/microscopy-novice/issues/34

This adds a first draft of the 'designing a light microscopy experiment' episode. This aims to introduce key factors to consider when designing a light microscopy experiment. It's more theoretical than the previous episodes, so the main idea is to take an example research question, then break off into small groups/pairs for the exercises to discuss possible methods to solve it.

This one focuses on light microscopy concepts - so it would be great to get feedback from people with more light microscopy experience! (my experience is more EM/X-ray, so any input is much appreciated)

github-actions[bot] commented 7 months ago

Thank you!

Thank you for your pull request :smiley:

:robot: This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

Rendered Changes

:mag: Inspect the changes: https://github.com/HealthBioscienceIDEAS/microscopy-novice/compare/md-outputs..md-outputs-PR-41

The following changes were observed in the rendered markdown documents:

 config.yaml                                      |   1 +
 designing-a-light-microscopy-experiment.md (new) | 488 +++++++++++++++++++++++
 fig/confocal-example.png (new)                   | Bin 0 -> 819218 bytes
 fig/dic-example.jpg (new)                        | Bin 0 -> 70191 bytes
 fig/fluorescence-example.jpg (new)               | Bin 0 -> 29795 bytes
 fig/phase-contrast.jpg (new)                     | Bin 0 -> 148011 bytes
 fig/skin.png (new)                               | Bin 0 -> 960814 bytes
 md5sum.txt                                       |   3 +-
 8 files changed, 491 insertions(+), 1 deletion(-)
What does this mean? If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible. This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

:stopwatch: Updated at 2024-02-06 17:02:57 +0000

K-Meech commented 6 months ago

@thompson318 @davecash75 - I made a new version of the 'designing a light microscopy experiment' episode incorporating your comments. Could you take another look and approve or request changes? Thanks!

K-Meech commented 6 months ago

@davecash75 - I made the edits you suggested. Feel free to merge this PR if you're happy with the changes!