Closed K-Meech closed 5 months ago
Thank you for your pull request :smiley:
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:mag: Inspect the changes: https://github.com/HealthBioscienceIDEAS/microscopy-novice/compare/md-outputs..md-outputs-PR-42
The following changes were observed in the rendered markdown documents:
choosing-acquisition-settings.md (new) | 670 +++++++++++++++++++++
config.yaml | 1 +
fig/acquisition-tradeoffs.png (new) | Bin 0 -> 40116 bytes
fig/aliasing.png (new) | Bin 0 -> 18474 bytes
fig/exercise-qc-histograms.png (new) | Bin 0 -> 95451 bytes
fig/image-with-noise.png (new) | Bin 0 -> 634267 bytes
fig/nyquist-1.png (new) | Bin 0 -> 10987 bytes
fig/nyquist-2.png (new) | Bin 0 -> 12206 bytes
fig/nyquist-3.png (new) | Bin 0 -> 12772 bytes
fig/pixel-size-magnification-exercise-1.png (new) | Bin 0 -> 15816 bytes
fig/pixel-size-magnification-exercise-2.png (new) | Bin 0 -> 7561 bytes
fig/snr-comparison-high.png (new) | Bin 0 -> 54177 bytes
fig/snr-comparison-low.png (new) | Bin 0 -> 59270 bytes
.../QC_histogram_exercise.py (new) | 44 ++
.../image_with_noise.py (new) | 34 ++
.../snr_comparison.py (new) | 44 ++
md5sum.txt | 3 +-
17 files changed, 795 insertions(+), 1 deletion(-)
:stopwatch: Updated at 2024-02-07 13:36:18 +0000
@thompson318 @davecash75 - I made a new version of the 'choosing acquisition settings' episode incorporating your comments. Could you take another look and approve or request changes?
I made a separate issue - https://github.com/HealthBioscienceIDEAS/microscopy-novice/issues/47 - for improving the docstring/comments on all plot scripts after the episodes are complete.
Closes https://github.com/HealthBioscienceIDEAS/microscopy-novice/issues/35
This adds a first draft of the 'choosing acquisition settings' episode. This aims to introduce key factors to consider when choosing acquisition settings on a light microscope. Like the last episode, it's quite theoretical, so it focuses on introducing general concepts with a few small examples and exercises.
There are a few scripts under episodes/files/ added here to generate some of the plots in this episode.
Again this one focuses on light microscopy concepts - so it would be great to get feedback from people with more light microscopy experience!