Quality control and manual segmentation episode

[K-Meech]

Closes https://github.com/HealthBioscienceIDEAS/microscopy-novice/issues/36

This adds a first draft of the 'quality control and manual segmentation' episode. This aims to introduce some basic quality control concepts, as well as the basics of segmentation, and specifically manual segmentation in Napari.

Note - this uses the latest version of napari-matplotlib for the histograms! So you may need to upgrade to see the same images. I'll open another PR soon to update the histogram images in other episodes to match this new version.

[github-actions[bot]]

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If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

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Rendered Changes

:mag: Inspect the changes: https://github.com/HealthBioscienceIDEAS/microscopy-novice/compare/md-outputs..md-outputs-PR-43

The following changes were observed in the rendered markdown documents:

 config.yaml                                      |   1 +
 fig/instance-seg-napari.png (new)                | Bin 0 -> 230239 bytes
 fig/label-layer-controls.png (new)               | Bin 0 -> 14266 bytes
 fig/nuclei-histogram-zoom.png (new)              | Bin 0 -> 13166 bytes
 fig/nuclei-histogram.png (new)                   | Bin 0 -> 15459 bytes
 fig/pixel-value-segmentation.png (new)           | Bin 0 -> 202853 bytes
 fig/semantic-seg-napari.png (new)                | Bin 0 -> 235455 bytes
 fig/single-painted-nucleus.png (new)             | Bin 0 -> 135201 bytes
 fig/two-painted-nuclei.png (new)                 | Bin 0 -> 134870 bytes
 md5sum.txt                                       |   4 +-
 quality-control-and-manual-segmentation.md (new) | 661 +++++++++++++++++++++++
 11 files changed, 664 insertions(+), 2 deletions(-)

What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible. This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

:stopwatch: Updated at 2024-02-21 13:46:39 +0000

[K-Meech]

@thompson318 @davecash75 - I made a new version of the 'quality control and manual segmentation' episode incorporating your comments. Could you take another look and approve or request changes?