Closed K-Meech closed 5 months ago
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:mag: Inspect the changes: https://github.com/HealthBioscienceIDEAS/microscopy-novice/compare/md-outputs..md-outputs-PR-43
The following changes were observed in the rendered markdown documents:
config.yaml | 1 +
fig/instance-seg-napari.png (new) | Bin 0 -> 230239 bytes
fig/label-layer-controls.png (new) | Bin 0 -> 14266 bytes
fig/nuclei-histogram-zoom.png (new) | Bin 0 -> 13166 bytes
fig/nuclei-histogram.png (new) | Bin 0 -> 15459 bytes
fig/pixel-value-segmentation.png (new) | Bin 0 -> 202853 bytes
fig/semantic-seg-napari.png (new) | Bin 0 -> 235455 bytes
fig/single-painted-nucleus.png (new) | Bin 0 -> 135201 bytes
fig/two-painted-nuclei.png (new) | Bin 0 -> 134870 bytes
md5sum.txt | 4 +-
quality-control-and-manual-segmentation.md (new) | 661 +++++++++++++++++++++++
11 files changed, 664 insertions(+), 2 deletions(-)
:stopwatch: Updated at 2024-02-21 13:46:39 +0000
@thompson318 @davecash75 - I made a new version of the 'quality control and manual segmentation' episode incorporating your comments. Could you take another look and approve or request changes?
Closes https://github.com/HealthBioscienceIDEAS/microscopy-novice/issues/36
This adds a first draft of the 'quality control and manual segmentation' episode. This aims to introduce some basic quality control concepts, as well as the basics of segmentation, and specifically manual segmentation in Napari.
Note - this uses the latest version of napari-matplotlib for the histograms! So you may need to upgrade to see the same images. I'll open another PR soon to update the histogram images in other episodes to match this new version.