Closed dpshelio closed 8 months ago
This is a rough draft of the episode titles and learning objectives for the first day. I've tried to frame learning objectives as 'After following this lesson, learners should be able to…'. Any suggestions/comments very welcome @drmatthews @davecash75 ! Throughout we will mostly use example data that comes with napari.
Hi @K-Meech - thanks this is a really great start for this day. Please find comments below, hopefully we can discuss at the upcoming meeting. Are these currently listed in order of how you think they might be presented? On top of the episodes already listed, there is probably a general overview episode of the workshop and how things will work that would come first. From the comments, I think there might be a broad scale overview of microscopy covering some of the aspects that Nic mentioned in the document only at a high level. I think that would likely come early, either before or after What is an image. After these two I think I could then see filetypes and image software, with the Image Display as a more hands-on practical lesson, and finally the multi-dimensional images after that (to get people comfortable with principles in 2D first and then the next group of episodes. Some of the Image display and Imaging Software probably could go together (thinking scan/pan/zoom, colormaps, brightness/contrast), and then some of the histogram, stats stuff we do separately, as initially there was talk of including it in the second day. To me the distinction in the episodes is how you navigate around and display the image versus how you measure something from an image.
Thanks for the comments @davecash75 !
Yes - they are listed in a rough presenting order. I was thinking of introducing napari at the start, so that all the other episodes could have hands-on exercises working with image data in napari. For the basic episodes (what is an image / image display / multi-dimensional images), I was thinking we could use the example data that comes with napari - progressing from 2D, to 3D, channels + 3D and so on… This is why I originally put the filetypes/metadata at the end, so that we could then use more complex 'real' data with metadata for examples. Plus, by then they should be pretty familiar using napari, so installing additional plugins (like aicsimageio) should be easier.
For your comments:
HI @K-Meech - The rationale for napari being first up makes sense and filetypes/metadata later, so we go with skimages to get basic concepts of imaging down and also to formats/metadata being at the end of the day. Some other thoughts:
The list with objectives is done. Creating 5 new tickets - 1 for content of each episode.
I'll close this as there are now drafts of all these episodes merged or as PRs
Definition of done
Dependencies