HealthML / self-supervised-3d-tasks

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About UK Biobank dataset #3

Closed Scipio1996 closed 3 years ago

Scipio1996 commented 3 years ago

Hello, you said pre-trained on UK Biobank, which contains roughly 22k 3D scans. However, I can only find around 1K brain data. Can you share your download links? Thank you very much!

aihamtaleb commented 3 years ago

Hi, thanks for your inquiry.

you're kindly referred to the UKB documentation here: http://biobank.ndph.ox.ac.uk/showcase/exinfo.cgi?src=accessing_data_guide#download for information on UKB specific scripts Beware that the downloading process is split into batches, and the number of patients per batch should be limited to 1000 patient ids. The download script we implemented for this purpose can be found here: https://gitlab.com/statistical-genomics/ukbb_utils