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HealthRex / CDSS

Clinical decision support system by HealthRex laboratory at Stanford University.
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Run Lab Normality Prediction pipeline on common panel component results #176

Closed jonc101 closed 6 years ago

jonc101 commented 6 years ago

Base names and descriptions of the component labs for the most common "daily labs" ordered in the hospital (basic metabolic panel, complete blood count, liver function tests, arterial blood gas).

See if able to build a prediction model for each one of these

base_name component_name BUN UREA NITROGEN,SER/PLAS CA CALCIUM, SER/PLAS CL CHLORIDE, SER/PLAS CO2 CO2, SER/PLAS CR CREATININE, SER/PLAS GLU GLUCOSE, SER/PLAS K POTASSIUM, SER/PLAS NA SODIUM, SER/PLAS

ALB ALBUMIN, SER/PLAS ALKP ALK P\'TASE, TOTAL, SER/PLAS ALT ALT (SGPT), SER/PLAS AST AST (SGOT), SER/PLAS DBIL CONJUGATED BILI IBIL UNCONJUGATED BILIRUBIN TBIL TOTAL BILIRUBIN TP PROTEIN, TOTAL, SER/PLAS

WBC WBC HGB HEMOGLOBIN PLT PLATELET COUNT

PHA PH (A) PCO2A PCO2 (A) PO2A PO2 (A)

sxu11 commented 6 years ago

Done the following ones (according to the components listed the other day in Slack): 'WBC', 'HGB', 'PLT', 'NA', 'K', 'CL', 'CR', 'BUN', 'GLU', 'CO2', 'CA', 'HCO3', 'TP', 'ALB', 'ALKP', 'TBIL', 'AST', 'ALT', among which 'HCO3' does not have sufficient associated patients. Results uploaded to Box/lab-normality-prediction-pipeline/Component_Predictions.

Still need to run 'DBIL', 'IBIL', 'PHA', 'PCO2A', 'PO2A'.

sxu11 commented 6 years ago

Done with Box/lab-normality-prediction-pipeline/Component_Predictions/'DBIL', 'IBIL', 'PHA', 'PCO2A', 'PO2A'.