starting from Seurat object or sce

HectorRDB / condiments

Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression

https://hectorrdb.github.io/condiments/

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starting from Seurat object or sce #17

Closed econnolly7 closed 1 year ago

econnolly7 commented 1 year ago

Great tool. Would it be possible to add a vignette showing the pipeline starting from a Seurat object or sce? Currently struggling on how to extract the necessary info for input from my sce (post running slingshot).

econnolly7 commented 1 year ago

Sorry just found your vignette using a sce as an input- https://hectorrdb.github.io/condimentsPaper/articles/Fibrosis.html

Thank you!!