Closed 83years closed 1 year ago
After some more troubleshooting it turns out that the issue was with a change in the order of the markers in the Panel.xlsx file. For some reason FlowJo decided to output them differently this time.
I am still not sure why this caused the above error but it's fixed so closing out the ticket.
Hi Helena,
I have been running the pipeline sucessfully for the last year with no issues whatsoever. Typically I copy an old script into a new folder and then update the md.xlsx and panel.xlsx files so that I have a record of old scripts and the changes I make. However, today I run the pipeline on a re-exported dataset and the
all(unlist(md_cols) %in% names(md)) is not TRUE
error appears.I check and double check the file names and they are correct, I then use the suggested solution to force the correct names.
keyword(fs, "FILENAME") %in% md$file_name
reports all TRUEOlder versions of the scripts all run correctly. Where else can this error?
session info