Closed juniajvs closed 1 year ago
Hm. Could you please 1. post the output of your sessionInfo()
; 2. assign the output of plotExprHeatmap()
(e.g., hm <- plotExperHeatmap(sce, ...)
) and do something like class(hm)
, hm@matrix
, ...; and, 3. assure there are no active graphic devices running (e.g., via graphics.off()
and dev.off()
). -- If none of these does the trick I'm really not sure what's going wrong.
Closing as this seems to be resolved. Feel free to reopen/continue the discussion if not!
Hello,
First of all, thank you so much for developing CATALYST, it is a great tool for CYTOF analysis.
I have been successfully using the plotClusterHeatmap (although it is deprecated) & plotExprHeatmap in my analysis, but today I encountered an issue with them. They seem to run without a problem since I get no errors in my console, but none was able to give me a plot.
Is there a lower bound for the total number of cells needed in order to successfully run the function? I have about 6,500 cells on the clusters I would like to plot a heatmap.
Thank you so much!