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HelenaLC / CATALYST

Cytometry dATa anALYsis Tools
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Subset out of bounds when creating single cell experiment #354

Closed Tregwiz closed 6 months ago

Tregwiz commented 1 year ago

Hi, Possibly I have made a really obvious mistake but I am getting the error message in the title when I try and create my single cell experiment and I can't work out why. Here is the code and the traceback:

sce2 <- prepData(GO2, panel3, md4, features = panel3$fcs_colname, cofactor = 150)

4. stop("Subset out of bounds", call. = FALSE) 3. fs[match(md[[md_cols$file]], ids)] 2. fs[match(md[[md_cols$file]], ids)] 1. prepData(GO2, panel3, md4, features = panel3$fcs_colname, cofactor = 150)

Thanks.

HelenaLC commented 1 year ago

Please provide more information when posting issues, and include relevant outputs. E.g., the output of your sessionInfo(), head(panel3) and head(md4), what is GO2, etc. It's hard to understand the issue / help when I don't know what your data looks like.

HelenaLC commented 6 months ago

closing due to insufficient information and inactivity.