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HelenaLC / CATALYST

Cytometry dATa anALYsis Tools
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More shapes than the 17 supported when connect paired samples with plotAbundances? #197 #377

Closed M4artin closed 8 months ago

M4artin commented 8 months ago

Hi Helena,

Thank you for a great package. Apologies for an elementary question, but is there a way to circumvent the limitations of 17 shapes that are currently supported in the e.g. the function "plotAbundances" when trying to reproduce your elegant answer on issue #197 (https://github.com/HelenaLC/CATALYST/issues/197). It's about a line between patients in a longitudinal study.

"At most 17 shapes are currently supported but 37 are required; setting 'shape_by' to NULL."

I tried scale_shape_manual() following the function, but to no avail, since it's set to NULL by plotAbundances when it has more than 17 shapes already before.

Otherwise, I'll try another solution.

kind regards Martin

M4artin commented 8 months ago

Hi,

I solved it on my own using the extracted sample_id.

kind regards Martin