Closed PhillipSsekamatte closed 6 months ago
Dear Helena,
My sce [ (sce <- prepData(PBMC_fs, PBMC_panel, PBMC_md, features = NULL)) ]object shows that I have only 10 rownames corresponding to 10 features.
class: SingleCellExperiment dim: 10 18428805 metadata(2): experiment_info chs_by_fcs assays(2): counts exprs rownames (10): IL-17A CD4 ... CD8 CD107a rowData names (3): channel_name marker_name marker_class colnames: NULL colData names(3): sample_id condition patient_id reducedDimNames(0): mainExpName: NULL altExpNames(0):
I have 13 of these. When I do colnames(PBMC_fs), they are 13
[1] "FJComp-BCL-2" "FJComp-CCR7" "FJComp-CD107a" "FJComp-CD4" [10] "FJComp-IL-17A" "FJComp-IL-2" "FJComp-PD-1" "FJComp-TNF" "FJComp-CD45RA" "FJComp-CD8" "FJComp-HLA-DR" "FJComp-IFN-g" "FJComp-IL-13"
How can I be helped?
Dear Helena,
My sce [ (sce <- prepData(PBMC_fs, PBMC_panel, PBMC_md, features = NULL)) ]object shows that I have only 10 rownames corresponding to 10 features.
class: SingleCellExperiment dim: 10 18428805 metadata(2): experiment_info chs_by_fcs assays(2): counts exprs rownames (10): IL-17A CD4 ... CD8 CD107a rowData names (3): channel_name marker_name marker_class colnames: NULL colData names(3): sample_id condition patient_id reducedDimNames(0): mainExpName: NULL altExpNames(0):
I have 13 of these. When I do colnames(PBMC_fs), they are 13
[1] "FJComp-BCL-2" "FJComp-CCR7" "FJComp-CD107a" "FJComp-CD4" [10] "FJComp-IL-17A" "FJComp-IL-2" "FJComp-PD-1" "FJComp-TNF" "FJComp-CD45RA" "FJComp-CD8" "FJComp-HLA-DR" "FJComp-IFN-g" "FJComp-IL-13"
How can I be helped?