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HelenaLC / muscat-comparison

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What is exact interpreter of the Snakefile? #4

Open darkcircle opened 1 year ago

darkcircle commented 1 year ago

I tried to test this source tree, but there is so many incomplete things, Shebang is missing and/or many code does not follow the syntax of specific programming language.

There seems to be no way to run code. How could I handle Snakefile? many explanation is not being on manual.

Thank you in advance.

HelenaLC commented 1 year ago

The workflow is written and executes using Snakemake, which is a Python-based workflow management system. Once installed, the Snakefile can be executed from the command via snakemake -j n where n = number of cores to used (provided you are in the directory where the Snakefile sits.