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HelenaLC / muscat

Multi-sample multi-group scRNA-seq analysis tools
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res <- pbDS(pb, verbose = FALSE) Error in x[[1]] : subscript out of bounds #116

Closed Jungkooklove0901 closed 1 year ago

Jungkooklove0901 commented 1 year ago

I ran res <- pbDS(pb, verbose = FALSE) and got the following error. Error in x[[1]] : subscript out of bounds

How should I solve it?

HelenaLC commented 1 year ago

As with any issues anywhere on GitHub, please post the output of your sessionInfo() so we can rule out package version- and/or dependency related issues. Also, please post and explain in more detail the code leading up to this point. The above is hardly reproducible and it is difficult (impossible, really) for me to help/advise given such little information.

Jungkooklove0901 commented 1 year ago

Thank you for your answer. Does the method use "edgeR", "DESeq2", "limma-trend", "limma-voom" have a significant impact on the result value?

HelenaLC commented 1 year ago

...closing due to insufficient information and non-responsiveness to above request. Happy to help out, discuss more etc. if more detail is provided.