fixed issue with scater computeLibraryFactors

[markziemann]

Received the error while installing: Error: object ‘computeLibraryFactors’ is not exported by 'namespace:scater' As the scater function is now called 'librarySizeFactors' in scater_1.12.2

[HelenaLC]

Dear Mark,

I apologies for the inconvenience and possible confusion, but this is not a mistake. I have replaced various functions in accordance with Bioconductor version 3.10. computeLibraryFactors is correct for scater version 1.13.x.

I have just submitted muscat to Bioc, and it is aimed to be released with Bioc 3.10 (current development version) which will be released in ~ October. Therefore, the installation may fail when using Bioc 3.9. Again, my apologies for this, but I hope you understand the reasoning for this.

• To check your current version: BiocManager::version()
• To run/install/update to Bioc 3.10 packages: BiocManager::install(version = "devel") (may want to install these into a separate library rather than overwriting the stable 3.9 version of packages)

[markziemann]

Now I understand. Thanks for the explanation.