Trouble loading data from GSE96583

HelenaLC / muscat

Multi-sample multi-group scRNA-seq analysis tools

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Trouble loading data from GSE96583 #75

Closed meghamsh738 closed 3 years ago

meghamsh738 commented 3 years ago

I wanted to replicate the results in the paper. However, I cant figure how to load the data into variable sce. Also unlike the 10x genomics output I know of (containings barcodes, matrixes, and features), this dataset contains only barcodes and matrix in a "Microsoft access table shortcut".

HelenaLC commented 3 years ago

The data has been made available has an SCE through Bioc’s ExperimentHub. Please see the muscData package vignette on Bioc for how to load the data in a few lines!