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HelenaLC / muscat

Multi-sample multi-group scRNA-seq analysis tools
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pbHeatmap doesn't match DS gene list? #85

Closed SimoniMD closed 2 years ago

SimoniMD commented 2 years ago

Hi!

When working through the vignette, I made a list of top DS genes found using pbDS(), but then when I do pbHeatmap() using the result from pbDS(), the genes displayed in the heatmap are different from the genes in the list. I'm trying to make a heatmap of the genes in the list, separated by cluster and condition. below is the code used. Any idea why? I can force it by making a gene list for the heatmap to use, but just wondering why these would be different by default. Thanks for the help and the great work!

HelenaLC commented 2 years ago

Can't see any code.

HelenaLC commented 2 years ago

Closing de to inactivity. Feel free to re-open should the issue persist, or to ask further questions in this thread.