After installing, check to see if OK with help command, but no joy. Installation is BUGGED.
(/workspace/appscratch/miniconda/pepstream) omegafold --help
Traceback (most recent call last):
File "/workspace/appscratch/miniconda/pepstream/bin/omegafold", line 33, in
sys.exit(load_entry_point('OmegaFold==0.0.0', 'console_scripts', 'omegafold')())
File "/workspace/appscratch/miniconda/pepstream/bin/omegafold", line 25, in importlib_load_entry_point
return next(matches).load()
File "/workspace/appscratch/miniconda/pepstream/lib/python3.8/importlib/metadata.py", line 77, in load
module = import_module(match.group('module'))
File "/workspace/appscratch/miniconda/pepstream/lib/python3.8/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "", line 1014, in _gcd_import
File "", line 991, in _find_and_load
File "", line 961, in _find_and_load_unlocked
File "", line 219, in _call_with_frames_removed
File "", line 1014, in _gcd_import
File "", line 991, in _find_and_load
File "", line 975, in _find_and_load_unlocked
File "", line 655, in _load_unlocked
File "", line 618, in _load_backward_compatible
File "", line 259, in load_module
File "/workspace/appscratch/miniconda/pepstream/lib/python3.8/site-packages/OmegaFold-0.0.0-py3.8.egg/omegafold/init.py", line 24, in
File "", line 991, in _find_and_load
File "", line 975, in _find_and_load_unlocked
File "", line 655, in _load_unlocked
File "", line 618, in _load_backward_compatible
File "", line 259, in load_module
File "/workspace/appscratch/miniconda/pepstream/lib/python3.8/site-packages/OmegaFold-0.0.0-py3.8.egg/omegafold/model.py", line 26, in
File "/workspace/appscratch/miniconda/pepstream/lib/python3.8/site-packages/torch-1.13.0-py3.8-linux-x86_64.egg/torch/init.py", line 191, in
_load_global_deps()
File "/workspace/appscratch/miniconda/pepstream/lib/python3.8/site-packages/torch-1.13.0-py3.8-linux-x86_64.egg/torch/init.py", line 153, in _load_global_deps
ctypes.CDLL(lib_path, mode=ctypes.RTLD_GLOBAL)
File "/workspace/appscratch/miniconda/pepstream/lib/python3.8/ctypes/init.py", line 373, in init
self._handle = _dlopen(self._name, mode)
OSError: libcudnn.so.8: cannot open shared object file: No such file or directory
After installing, check to see if OK with help command, but no joy. Installation is BUGGED.
(/workspace/appscratch/miniconda/pepstream) omegafold --help Traceback (most recent call last): File "/workspace/appscratch/miniconda/pepstream/bin/omegafold", line 33, in
sys.exit(load_entry_point('OmegaFold==0.0.0', 'console_scripts', 'omegafold')())
File "/workspace/appscratch/miniconda/pepstream/bin/omegafold", line 25, in importlib_load_entry_point
return next(matches).load()
File "/workspace/appscratch/miniconda/pepstream/lib/python3.8/importlib/metadata.py", line 77, in load
module = import_module(match.group('module'))
File "/workspace/appscratch/miniconda/pepstream/lib/python3.8/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "", line 1014, in _gcd_import
File "", line 991, in _find_and_load
File "", line 961, in _find_and_load_unlocked
File "", line 219, in _call_with_frames_removed
File "", line 1014, in _gcd_import
File "", line 991, in _find_and_load
File "", line 975, in _find_and_load_unlocked
File "", line 655, in _load_unlocked
File "", line 618, in _load_backward_compatible
File "", line 259, in load_module
File "/workspace/appscratch/miniconda/pepstream/lib/python3.8/site-packages/OmegaFold-0.0.0-py3.8.egg/omegafold/init.py", line 24, in
File "", line 991, in _find_and_load
File "", line 975, in _find_and_load_unlocked
File "", line 655, in _load_unlocked
File "", line 618, in _load_backward_compatible
File "", line 259, in load_module
File "/workspace/appscratch/miniconda/pepstream/lib/python3.8/site-packages/OmegaFold-0.0.0-py3.8.egg/omegafold/model.py", line 26, in
File "/workspace/appscratch/miniconda/pepstream/lib/python3.8/site-packages/torch-1.13.0-py3.8-linux-x86_64.egg/torch/init.py", line 191, in
_load_global_deps()
File "/workspace/appscratch/miniconda/pepstream/lib/python3.8/site-packages/torch-1.13.0-py3.8-linux-x86_64.egg/torch/init.py", line 153, in _load_global_deps
ctypes.CDLL(lib_path, mode=ctypes.RTLD_GLOBAL)
File "/workspace/appscratch/miniconda/pepstream/lib/python3.8/ctypes/init.py", line 373, in init
self._handle = _dlopen(self._name, mode)
OSError: libcudnn.so.8: cannot open shared object file: No such file or directory