Open AteeqMKhaliq opened 4 years ago
hi . same issue facing . kindly guide regarding this issue
Hi, Sorry for the late reply. The Coronavirus disease 2019 is spreading in our country and we are restricted at home. So there are delays in our work. I suggest using an absolute path in the command line like that:
nohup /AbsolutePath/DriverML-master/run.driverml.sh -w /AbsolutePath/DriverML-master -i example/UVM.txt -f /AbsolutePath/GRCh38.fa -r /AbsolutePath/hg19.fa -m 10 -o UVM-summary.txt > UVM-nohup.out
We are developing the second version of this software in order to make it more easily to use. Let me know if you have any questions or concerns.
Thanks for Reply Sir. May your country get rid of said virus soon. I have run this tool using this command but lots of directory error occurs(posted in githup issues section) . I try my best to resolve but failed to find solutions. Kindly help me regarding this issue
On Thu, Feb 27, 2020, 7:05 PM YiHan notifications@github.com wrote:
Hi, Sorry for the late reply. The Coronavirus disease 2019 is spreading in our country and we are restricted at home. So there are delays in our work. I suggest using an absolute path in the command line like that:
nohup /AbsolutePath/DriverML-master/run.driverml.sh -w /AbsolutePath/DriverML-master -i example/UVM.txt -f /AbsolutePath/GRCh38.fa -r /AbsolutePath/hg19.fa -m 10 -o UVM-summary.txt > UVM-nohup.out
We are developing the second version of this software in order to make it more easily to use. Let me know if you have any questions or concerns.
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I run into the same error. Also, when I run the script throws loads of warnings:
Use of uninitialized value $flank1bp in reverse at /data1/users/sanjeev/drivers/DriverML/DriverML/reduction.pl line 261.
substr outside of string at /data1/users/sanjeev/drivers/DriverML/DriverML/reduction.pl line 252.
@HelloYiHan can you help?
I provide full/absolute path of the input files.
Hi,
When we are trying to execute DriverML with the Example dataset its throwing the error please have a look,
Please let us know if we are doing it correctly. Regards Khaliq