Problem using h5py (load models)

HelmchenLabSoftware / Cascade

Calibrated inference of spiking from calcium ΔF/F data using deep networks

GNU General Public License v3.0

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Problem using h5py (load models) #17

Closed PTRRupprecht closed 3 years ago

PTRRupprecht commented 3 years ago

There is a compatibility problem with the h5py package. h5py version 3.0 is incompatible with tensorflow/keras <=2.3. This should be mentioned in the install instructions and be tested.

PTRRupprecht commented 3 years ago

Fixed. This issue could have occurred when a version of h5py newer or equally new as 3.0 is installed. Now we enforce the installation of h5py==2.10.0, see the readme:

"conda create -n Cascade python=3.6 tensorflow==2.1.0 keras==2.3.1 h5py==2.10.0 numpy scipy matplotlib seaborn ruamel.yaml spyder"

Starting with tensorflow 2.5, this bug is likely to be fixed, and we will then update also the requirements.