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HeloiseS / hoki

Bridging the gap between observation and theory
https://heloises.github.io/hoki/intro.html
BSD 3-Clause "New" or "Revised" License
47 stars 8 forks source link

[BPASS] Failed installation of hoki #70

Closed palfeng closed 3 years ago

palfeng commented 3 years ago

Hello,

I tried to install BPASS following the command: sudo -H pip3 install --user hoki It seems like the installation is good, but unfortunately I cannot import hoki after the installation. I tried several times in different conda environment, but all failed. I am appreciated if you can help!

Xinfeng

System: macOS, Mojave, v10.14 Log:

(BPASS2) Macintosh-4:python3.7 xuxinfeng$ sudo -H pip3 install --user hoki Collecting hoki Downloading hoki-1.5.1.tar.gz (62.7 MB) |████████████████████████████████| 62.7 MB 26.6 MB/s Installing build dependencies ... done Getting requirements to build wheel ... done Preparing wheel metadata ... done Requirement already satisfied: wheel in /Users/xuxinfeng/anaconda/envs/BPASS2/lib/python3.7/site-packages (from hoki) (0.36.2) Collecting corner Downloading corner-2.1.0-py2.py3-none-any.whl (11 kB) Requirement already satisfied: setuptools>=40.6.0 in /Users/xuxinfeng/anaconda/envs/BPASS2/lib/python3.7/site-packages (from corner->hoki) (51.0.0.post20201207) Collecting matplotlib Downloading matplotlib-3.3.3-cp37-cp37m-macosx_10_9_x86_64.whl (8.5 MB) |████████████████████████████████| 8.5 MB 19.9 MB/s Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.3 in /Users/xuxinfeng/anaconda/envs/BPASS2/lib/python3.7/site-packages (from matplotlib->hoki) (2.4.7) Requirement already satisfied: python-dateutil>=2.1 in /Users/xuxinfeng/anaconda/envs/BPASS2/lib/python3.7/site-packages (from matplotlib->hoki) (2.8.1) Collecting cycler>=0.10 Downloading cycler-0.10.0-py2.py3-none-any.whl (6.5 kB) Requirement already satisfied: six in /Users/xuxinfeng/anaconda/envs/BPASS2/lib/python3.7/site-packages (from cycler>=0.10->matplotlib->hoki) (1.15.0) Collecting kiwisolver>=1.0.1 Downloading kiwisolver-1.3.1-cp37-cp37m-macosx_10_9_x86_64.whl (61 kB) |████████████████████████████████| 61 kB 15.6 MB/s Collecting numpy Downloading numpy-1.19.4-cp37-cp37m-macosx_10_9_x86_64.whl (15.3 MB) |████████████████████████████████| 15.3 MB 36.5 MB/s Collecting pillow>=6.2.0 Downloading Pillow-8.0.1-cp37-cp37m-macosx_10_10_x86_64.whl (2.2 MB) |████████████████████████████████| 2.2 MB 63.0 MB/s Collecting emcee Downloading emcee-3.0.2-py2.py3-none-any.whl (41 kB) |████████████████████████████████| 41 kB 2.0 MB/s Collecting pandas Downloading pandas-1.1.5-cp37-cp37m-macosx_10_9_x86_64.whl (10.0 MB) |████████████████████████████████| 10.0 MB 35.8 MB/s Collecting pytz>=2017.2 Downloading pytz-2020.4-py2.py3-none-any.whl (509 kB) |████████████████████████████████| 509 kB 38.1 MB/s Collecting pysynphot Downloading pysynphot-1.0.0.tar.gz (10.8 MB) |████████████████████████████████| 10.8 MB 58.0 MB/s Installing build dependencies ... done Getting requirements to build wheel ... done Installing backend dependencies ... done Preparing wheel metadata ... done Collecting astropy Downloading astropy-4.2-cp37-cp37m-macosx_10_9_x86_64.whl (6.5 MB) |████████████████████████████████| 6.5 MB 18.9 MB/s Collecting beautifulsoup4 Downloading beautifulsoup4-4.9.3-py3-none-any.whl (115 kB) |████████████████████████████████| 115 kB 34.7 MB/s Collecting soupsieve>1.2 Downloading soupsieve-2.1-py3-none-any.whl (32 kB) Collecting pyerfa Downloading pyerfa-1.7.1.1-cp37-cp37m-macosx_10_9_x86_64.whl (304 kB) |████████████████████████████████| 304 kB 47.3 MB/s Collecting pyyaml Downloading PyYAML-5.3.1.tar.gz (269 kB) |████████████████████████████████| 269 kB 37.2 MB/s Collecting setuptools-scm Using cached setuptools_scm-5.0.1-py2.py3-none-any.whl (28 kB) Building wheels for collected packages: hoki, pysynphot, pyyaml Building wheel for hoki (PEP 517) ... done Created wheel for hoki: filename=hoki-1.5.1-py3-none-any.whl size=46275217 sha256=9d4e39a5d173b6f46bc135681b0fa90a683703f3ace99422efc936bb59bc62e5 Stored in directory: /private/var/root/Library/Caches/pip/wheels/38/82/d7/449dbfceba1a71b7c4925df341f6ebd90b2e3ded866f6b70d1 Building wheel for pysynphot (PEP 517) ... done Created wheel for pysynphot: filename=pysynphot-1.0.0-cp37-cp37m-macosx_10_9_x86_64.whl size=6688690 sha256=a68563d501a8273d610f41146f6da9944cce9b2fef57e78407ea617dc7f33304 Stored in directory: /private/var/root/Library/Caches/pip/wheels/45/54/e5/ded461804aa36e39001f9bfc4867261b47834c437a3c85e69d Building wheel for pyyaml (setup.py) ... done Created wheel for pyyaml: filename=PyYAML-5.3.1-cp37-cp37m-macosx_10_9_x86_64.whl size=44626 sha256=1406a471a7319b44faa02a858e33f93c2988360e4147443aa1e7919e22733f4b Stored in directory: /private/var/root/Library/Caches/pip/wheels/5e/03/1e/e1e954795d6f35dfc7b637fe2277bff021303bd9570ecea653 Successfully built hoki pysynphot pyyaml Installing collected packages: numpy, soupsieve, pyerfa, pillow, kiwisolver, cycler, setuptools-scm, pytz, matplotlib, beautifulsoup4, astropy, pyyaml, pysynphot, pandas, emcee, corner, hoki WARNING: The scripts f2py, f2py3 and f2py3.7 are installed in '/var/root/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. NOTE: The current PATH contains path(s) starting with ~, which may not be expanded by all applications. WARNING: The scripts fits2bitmap, fitscheck, fitsdiff, fitsheader, fitsinfo, samp_hub, showtable, volint and wcslint are installed in '/var/root/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. NOTE: The current PATH contains path(s) starting with ~, which may not be expanded by all applications. WARNING: The script astropy-package-template-example is installed in '/var/root/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. NOTE: The current PATH contains path(s) starting with ~, which may not be expanded by all applications. Successfully installed astropy-4.2 beautifulsoup4-4.9.3 corner-2.1.0 cycler-0.10.0 emcee-3.0.2 hoki-1.5.1 kiwisolver-1.3.1 matplotlib-3.3.3 numpy-1.19.4 pandas-1.1.5 pillow-8.0.1 pyerfa-1.7.1.1 pysynphot-1.0.0 pytz-2020.4 pyyaml-5.3.1 setuptools-scm-5.0.1 soupsieve-2.1

(BPASS2) Macintosh-4:python3.7 xuxinfeng$ python Python 3.7.9 (default, Aug 31 2020, 07:22:35) [Clang 10.0.0 ] :: Anaconda, Inc. on darwin Type "help", "copyright", "credits" or "license" for more information.

import hoki Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'hoki' exit()

maxbriel commented 3 years ago

Hi palfeng!

Thank you for your message! Annoying that hoki does not want to install in your environment. While I have an idea what is going on, I need some more information to be able to provide a solution.

  1. How have you setup your conda environment? (what commands)
  2. Have you installed an new instance of pip within your "BPASS2" environment?
  3. Have you tried the installation using pip install hoki within you conda environment?

When in an environment it is not recommended to use --user when installing packages. This and sudo might be what are causing your issue with the installation. It's most likely installing hoki outside your environment.

As a possible solution:

  1. Within your environment run pip install hoki. If this did not run successfully, go to 3.
  2. To verify if the installation succeeded, run conda list and check if hoki is in the list.
  3. If not on the list, install a new instance of pip from outside the environment: conda install -n BPASS2 pip
  4. Activate your environment again and retry to install hoki using pip install hoki

Please let me know about the questions and if the possible solution works or how far you were able to get with the steps.

Kind regards, Max

palfeng commented 3 years ago

Thanks Max, I finished all 4 steps and now hoki is correctly installed!

Thanks a lot!

Cheers, Xinfeng

On Dec 16, 2020, at 5:28 PM, Max notifications@github.com wrote:

Hi palfeng!

Thank you for your message! Annoying that hoki does not want to install in your environment. While I have an idea what is going on, I need some more information to be able to provide a solution.

How have you setup your conda environment? (what commands) Have you installed an new instance of pip within your "BPASS2" environment? Have you tried the installation using pip install hoki within you conda environment? When in an environment it is not recommended to use --user when installing packages. This and sudo might be what are causing your issue with the installation. It's most likely installing hoki outside your environment.

As a possible solution:

Within your environment run pip install hoki. If this did not run successfully, go to 3. To verify if the installation succeeded, run conda list and check if hoki is in the list. If not on the list, install a new instance of pip from outside the environment: conda install -n BPASS2 pip Activate your environment again and retry to install hoki using pip install hoki Please let me know about the questions and if the possible solution works or how far you were able to get with the steps.

Kind regards, Max

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/HeloiseS/hoki/issues/70#issuecomment-747078760, or unsubscribe https://github.com/notifications/unsubscribe-auth/AD6I2JXHSWDJVRT5HVAO7D3SVEYCPANCNFSM4U6TBOGA.