Make the code more flexible with file naming conventions

Hendrik-code / spineps

This is a segmentation pipeline to automatically, and robustly, segment the whole spine in T2w sagittal images.

Apache License 2.0

7 stars 1 forks source link

Make the code more flexible with file naming conventions #24

Open NathanMolinier opened 1 week ago

NathanMolinier commented 1 week ago

Description

Spineps fails to compile when encountering files with different naming conventions. Can it be made more flexible, or can a flag be added to limit these preprocessing checks ?

I understand the importance of pushing BIDS forward, but I believe these checks and errors might discourage people from using the tool.

To Reproduce

Name a file with the entity acq-mprage and run spineps

Hendrik-code commented 1 week ago

If you set both ignore_bids_filter: bool = False, ignore_compatibility_issues: bool = False,

to True, SPINEPS should not check anything in that regard anymore.