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HennyJie / BrainGB

Officially Accepted to IEEE Transactions on Medical Imaging (TMI, IF: 11.037) - Special Issue on Geometric Deep Learning in Medical Imaging.
MIT License
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Dataset Construction Link is still Broken! #9

Closed SaqibMamoon closed 9 months ago

SaqibMamoon commented 1 year ago

Hi, Thank you sharing such a great project and insightful article and code. However, dataset reconstruction link is broken, and I can't find here.

Also, Could you please elaborate what should be the shape the dataset before input like for ABIDE dataset.

` def load_data_abide(abide_path):

data = np.load(abide_path + '/abide.npy', allow_pickle=True).item()

final_pearson = data["corr"]

labels = data["label"]

return final_pearson, labels

`

How did you construct the abide.npy file, like data shape and structure of it.

Thanks!!

LearningKeqi commented 9 months ago

Thank you for your interest in this work! We understand the challenges faced by researchers in accessing certain datasets due to restrictions. To facilitate your experimentation with BrainGB, we provide the Autism Brain Imaging Data Exchange (ABIDE) dataset, which is publicly accessible and does not require special access permissions.

After the download and preprocess steps, you should get abide.npy dataset, please place the dataset file "abide.npy" in the datasets folder under the examples folder (Create the folder if it does not exist).